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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21322696_21322916_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21322696 - 21322916
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
GCGGTGCCCGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TGCCGCTGACCC
Flanking Amino Acid:
MRKSEVLAAEAVS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
58.7
0.2
1
50.2
39.3
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
43.4
-0.5
2.1
53.35
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000004145
21322599 - 21329801
7203
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000023057
21322599 - 21329801
7203