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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21323050_21323132_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21323050 - 21323132
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGCCCGGCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CACCTCTCACCG
Flanking Amino Acid:
RTDVVKKHIKSLLDMMVAEE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
56.6
0.15
1
49.7
39.2
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
42.8
-0.6
1.8
41.43
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000004145
21322599 - 21329801
7203
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000023057
21322599 - 21329801
7203