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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21323256_21323547_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21323256 - 21323547
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
TGGTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCGCAA
U12 Branch Point Sequence:
GTTTTCTGGTCT
Flanking Amino Acid:
CRELRLDPFEAEEESTILQM
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
49.3
-0
1.4
59.5
39
Major PPT
65.9
0.36
1
57.9
43.1
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
43.6
-0.4
3.5
76.17
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000004145
21322599 - 21329801
7203
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000023057
21322599 - 21329801
7203
ENSAPLT00000022732
21316429 - 21324065
7637