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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21323782_21323861_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21323782 - 21323861
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TCGTCACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GGCTCGTCACCT
Flanking Amino Acid:
RHLASLSAEKERRREEFVSI
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.7
0.53
0.9
66.7
34.5
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
43.3
-0.4
2.4
61.55
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023057
21322599 - 21329801
7203
ENSAPLT00000004145
21322599 - 21329801
7203
ENSAPLT00000030449
21272454 - 21323950
51497