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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21326244_21326569_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21326244 - 21326569
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CCCCCCTCACCT
Flanking Amino Acid:
TPHTPGKVRKLNGTSISSAT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
77.4
0.62
0.8
69.5
36.8
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
47.5
-0.1
1.9
61.08
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004145
21322599 - 21329801
7203