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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21326681_21327109_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21326681 - 21327109
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTCAT
U12 Branch Point Sequence:
CTGTCTTCCATT
Flanking Amino Acid:
TSRLPPSGGKQLGQARTPSR
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
67
0.42
1.4
71.4
45.1
Major PPT
82.7
0.74
0.8
74.1
35.3
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
48.4
-0
2
67.18
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004145
21322599 - 21329801
7203