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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21337037_21337192_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21337037 - 21337192
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGCG
Flanking Amino Acid:
PPICKRIPQVTVHWLEILQA
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
68.7
0.42
0.9
61.5
35
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
42.5
-0.7
2.1
44.77
46.9

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122