About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21337798_21337966_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21337798 - 21337966
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCAGTGTC
5'SS Class:
major
3'SS Sequence:
GCTCTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
GAGCCCTCCACT
Flanking Amino Acid:
NPEMAFPGERIYEVVRPLVS
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.3
72.2
39
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
77.5
0.62
0.8
71.8
32.8
Minor 5ss
32.2
-2
3.2
36.2
40.7
Minor BPS
47.8
-0
2
64.13
45.4

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122