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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21338575_21338786_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21338575 - 21338786
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCGGGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTGGCTCTGACT
Flanking Amino Acid:
KQHIPEQHPKDKPDFVKRRV
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
53.8
0.09
1.1
48.7
39.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
54.9
0.23
1.8
75.39
41.9

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122