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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21339257_21339330_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21339257 - 21339330
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GGCCGTCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
GAGTCCTGCAGG
Flanking Amino Acid:
STMKLAKQCRKWLCNEAIDT
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
64.8
0.33
0.9
57
38.7
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
43
-0.7
2.2
46.13
46

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122