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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21339863_21340089_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21339863 - 21340089
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTTAT
U12 Branch Point Sequence:
TCAGCCTTATCC
Flanking Amino Acid:
NFHHLCEDYVRSWFEGHELA
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
61.1
0.28
1.3
53.6
43.8
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
59.8
0.29
1.8
66.86
44.7

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122