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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21340262_21340403_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21340262 - 21340403
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
GGTGCCTGAGCT
Flanking Amino Acid:
NSMSLWVIDQGLKKILEVGS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
73.8
0.53
0.9
66.1
40.8
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
51.9
0.14
1.9
70.89
45.2

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122