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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21340575_21340775_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21340575 - 21340775
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTGGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTCCCCTGGAAG
Flanking Amino Acid:
FRGKEDAVVLDSSKDMKLLI
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
61.7
0.26
1.1
63.8
31.6
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
46.9
-0.3
1.7
49.99
43.8

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122