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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21342163_21342772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21342163 - 21342772
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACCT
Flanking Amino Acid:
RNRAACHLKLEDYAEAEADA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
56
43.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
25.7
-2.8
3.1
28.3
38.6
Minor BPS
52.9
0.17
1.9
71.07
46.1

Associated Gene:

Gene:
UNC45A
Ensembl Gene ID:
ENSAPLG00000004720
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004949
21336123 - 21344244
8122