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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21346159_21346319_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21346159 - 21346319
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGCGCGT
5'SS Class:
weak_major
3'SS Sequence:
TGTTCTCAGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCCTTCTTAATT
Flanking Amino Acid:
MEIATFRVRLGFRTVSCCGR
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.3
46.1
49.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
65.3
0.34
1
62.4
39
Minor 5ss
36.2
-1.6
3.6
47.2
48.2
Minor BPS
71.1
0.74
1.2
75.64
41.8

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051