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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21346469_21346823_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21346469 - 21346823
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
GTGACCGCACCA
Flanking Amino Acid:
GFNCTTTQGKLALGSLFQGL
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
70
0.45
0.8
61.9
34.8
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
40.9
-0.7
2.3
53.02
44.9

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000039999
21344912 - 21353962
9051