Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21346935_21347007_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21346935 - 21347007

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCGT

5'SS Class:

strong_major

3'SS Sequence:

CCGCTGCCAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAT

U12 Branch Point Sequence:

GTCCCCAGCACC

Flanking Amino Acid:

ILNLRTLQAEDDSLPSAEAA

Intron Amino Acid Position:

1024

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

68.8

43.8

Major BPS

64.6

0.36

1.3

67.6

40.6

Major PPT

60.8

0.24

54.7

35.2

Minor 5ss

34.1

-1.8

3.2

47.7

47.8

Minor BPS

43.1

-0.5

2.1

54.78

42.5

Associated Gene:

Gene:

MAN2A2

Ensembl Gene ID:

ENSAPLG00000005234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023483

21344912 - 21353962

9051

ENSAPLT00000044778

21344912 - 21353962

9051

ENSAPLT00000021092

21344912 - 21353962

9051

ENSAPLT00000041921

21329752 - 21353962

24211

ENSAPLT00000048514

21330011 - 21353962

23952

ENSAPLT00000005439

21346316 - 21353962

7647

ENSAPLT00000039999

21344912 - 21353962

9051

ENSAPLT00000030508

21329752 - 21353962

24211

ENSAPLT00000047288

21346159 - 21353962

7804