About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21347203_21347920_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21347203 - 21347920
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TGCTCTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TCGCGCTGACCG
Flanking Amino Acid:
LLERRATANKAQDGRPVSFP
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
74.5
0.55
1
68.7
42
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
41.8
-0.7
2.1
45.2
46.8

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000030508
21329752 - 21353962
24211