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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21348505_21348598_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21348505 - 21348598
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACAA
5'SS Class:
major
3'SS Sequence:
TGCTGGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CAGCCGCTCACT
Flanking Amino Acid:
QTVVRLYNVPGVEGLSLDVS
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
63.9
38
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
65.3
0.35
1
57.1
38.8
Minor 5ss
24.4
-2.9
3.1
29.1
43.5
Minor BPS
38.8
-0.8
2.5
54.99
46.4

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952