Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21349708_21349921_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21349708 - 21349921

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

CTCTGCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTGCAT

U12 Branch Point Sequence:

TCCTGGTGCATC

Flanking Amino Acid:

RTVIKLGASPRFLVVFNPLE

Intron Amino Acid Position:

608

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

55.6

48.6

Major BPS

46.9

-0.2

1.6

57.1

49.4

Major PPT

76.4

0.6

0.8

69.4

31.3

Minor 5ss

33.5

-1.9

3.7

47.3

48.1

Minor BPS

35.7

-1.1

2.5

45.86

43.8

Associated Gene:

Gene:

MAN2A2

Ensembl Gene ID:

ENSAPLG00000005234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021092

21344912 - 21353962

9051

ENSAPLT00000041921

21329752 - 21353962

24211

ENSAPLT00000005439

21346316 - 21353962

7647

ENSAPLT00000039999

21344912 - 21353962

9051

ENSAPLT00000048514

21330011 - 21353962

23952

ENSAPLT00000030508

21329752 - 21353962

24211

ENSAPLT00000047288

21346159 - 21353962

7804

ENSAPLT00000023483

21344912 - 21353962

9051

ENSAPLT00000044778

21344912 - 21353962

9051