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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21350307_21350471_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21350307 - 21350471
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGCGTGCG
5'SS Class:
major
3'SS Sequence:
CCCGCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GGTGTCTCACTG
Flanking Amino Acid:
KEAVVVDYGVRLLHSLSSLK
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
57.3
42
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
67
0.38
0.9
56.8
38.8
Minor 5ss
27
-2.6
3.2
32.6
42.1
Minor BPS
42.8
-0.6
1.9
44.29
42.1

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952