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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21350307_21350930_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21350307 - 21350930
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
CCCGCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GGTGTCTCACTG
Flanking Amino Acid:
SLDRVLETHLRLLHSLSSLK
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
67
0.38
0.9
56.8
38.8
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
42.8
-0.6
1.9
44.29
42.1

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021092
21344912 - 21353962
9051