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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21350655_21350930_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21350655 - 21350930
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TGTCCCTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
TCCTGGGTGACT
Flanking Amino Acid:
SLDRVLETHLRGAEILYSLA
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
70.3
0.46
0.9
65.1
36.2
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
39.9
-0.7
2.8
62.07
48.4

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952