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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21351134_21351261_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21351134 - 21351261
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
TGCTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
CTCCCCGCAGCA
Flanking Amino Acid:
LNSQPHLHVQAQFGTLSDYF
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
70.3
35.3
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
71.9
0.49
0.9
65.5
36.1
Minor 5ss
28
-2.5
3.2
36
40.9
Minor BPS
41.2
-0.6
2.3
52.78
45.3

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000047288
21346159 - 21353962
7804