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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21351440_21351525_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21351440 - 21351525
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GGCCCCGTGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCTCCGGTAGCC
Flanking Amino Acid:
RAITEANVAERAQLLLDQYR
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
55.7
0.13
1.1
49.4
39.3
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
38.8
-0.8
2.6
51.03
46

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000047288
21346159 - 21353962
7804