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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21351713_21352001_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21351713 - 21352001
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
CTCGGTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGATGCTCATCT
Flanking Amino Acid:
NLEFMWRQAWDPDSSTDIFC
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.6
36.5
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
72.7
0.51
0.9
65.3
36.3
Minor 5ss
27.2
-2.6
3.3
31.5
42.2
Minor BPS
47.7
-0
2.2
70.15
46.1

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952