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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21352176_21352254_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21352176 - 21352254
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TCTGTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACAAGA
Flanking Amino Acid:
EGHQWLEKNIGVTPRSGWAV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
69
35.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.3
0.48
0.9
61.9
40
Minor 5ss
28.1
-2.5
3.3
40.6
45.1
Minor BPS
41.2
-0.6
1.9
49.31
41.6

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000030508
21329752 - 21353962
24211