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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21353498_21353657_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21353498 - 21353657
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CCCGTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCGTGCTCACCG
Flanking Amino Acid:
RHQSGGNFPRSQISVLQNRI
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
66.2
0.37
0.9
56.5
38.8
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
41.8
-0.7
2.2
43.77
47.7

Associated Gene:

Gene:
MAN2A2
Ensembl Gene ID:
ENSAPLG00000005234
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030508
21329752 - 21353962
24211
ENSAPLT00000047288
21346159 - 21353962
7804
ENSAPLT00000023483
21344912 - 21353962
9051
ENSAPLT00000044778
21344912 - 21353962
9051
ENSAPLT00000021092
21344912 - 21353962
9051
ENSAPLT00000041921
21329752 - 21353962
24211
ENSAPLT00000005439
21346316 - 21353962
7647
ENSAPLT00000039999
21344912 - 21353962
9051
ENSAPLT00000048514
21330011 - 21353962
23952