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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21359285_21359394_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21359285 - 21359394
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGTG
5'SS Class:
major
3'SS Sequence:
TGCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAG
U12 Branch Point Sequence:
CCGGCCCGACCC
Flanking Amino Acid:
NQQTREAVEQGVRLEPPELC
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.9
42.4
Major BPS
40.9
-0.5
1.5
46.1
38.7
Major PPT
68.7
0.42
0.8
61.8
28.9
Minor 5ss
26.9
-2.6
3.5
29
43.5
Minor BPS
39.3
-0.8
2
43.08
44.3

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000020360
21359029 - 21364353
5325
ENSAPLT00000005856
21359029 - 21365055
6027
ENSAPLT00000005839
21359029 - 21365055
6027
ENSAPLT00000034727
21359029 - 21364353
5325