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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21359890_21359995_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21359890 - 21359995
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGG
5'SS Class:
major
3'SS Sequence:
TGAGCCGCCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TGGCTCTGAGCC
Flanking Amino Acid:
EYLESKRCIHRDLAARNCLV
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
45
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
57.9
0.18
1
47
41.3
Minor 5ss
36.4
-1.5
3.2
46.4
49
Minor BPS
47.9
-0.1
1.7
57.45
40.8

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000020360
21359029 - 21364353
5325
ENSAPLT00000005856
21359029 - 21365055
6027
ENSAPLT00000005839
21359029 - 21365055
6027
ENSAPLT00000034727
21359029 - 21364353
5325