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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21360663_21361386_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21360663 - 21361386
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TGTCTCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGCAT
U12 Branch Point Sequence:
GCCGGTGCATCC
Flanking Amino Acid:
PRHFIIQAADGNFGEVFSGR
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.9
33.8
Major BPS
46.9
-0.2
1.6
57.1
49.4
Major PPT
73.3
0.52
1
69.7
36.7
Minor 5ss
28.9
-2.4
3.1
33.6
35
Minor BPS
28.7
-1.6
2.1
29.74
36.7

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020360
21359029 - 21364353
5325