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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21360809_21360964_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21360809 - 21360964
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GCTCGCTGACCT
Flanking Amino Acid:
GIVLARAVPKDKWVLNHEDV
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
72.7
0.51
0.9
65.6
36.1
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
45
-0.3
2.1
62.98
46.6

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034727
21359029 - 21364353
5325
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000005856
21359029 - 21365055
6027
ENSAPLT00000005839
21359029 - 21365055
6027