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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21361885_21361990_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21361885 - 21361990
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CACGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GACAGCTCACAC
Flanking Amino Acid:
QEDRHSVSSVEQERSGATAL
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.2
37.4
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
70
0.45
0.9
61.1
39.8
Minor 5ss
31.6
-2.1
2.9
39.6
39.8
Minor BPS
36.3
-1
2
38.67
39.2

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005839
21359029 - 21365055
6027
ENSAPLT00000034727
21359029 - 21364353
5325
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000020360
21359029 - 21364353
5325
ENSAPLT00000005856
21359029 - 21365055
6027