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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21362372_21362670_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21362372 - 21362670
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGATG
5'SS Class:
major
3'SS Sequence:
ACATCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAT
U12 Branch Point Sequence:
GCCCACCCAACA
Flanking Amino Acid:
TEYSSFVQCHSLTSIEEELA
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.7
44.4
Major BPS
57.6
0.19
1
64.6
32.2
Major PPT
76.5
0.6
0.9
69.8
35.7
Minor 5ss
33.8
-1.8
3.6
47.3
48.3
Minor BPS
41.6
-0.6
1.9
47.96
41.5

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005839
21359029 - 21365055
6027