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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21362574_21362670_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21362574 - 21362670
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGATG
5'SS Class:
major
3'SS Sequence:
CGGGTGCCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCAGAG
U12 Branch Point Sequence:
CAGAGGGCAGCT
Flanking Amino Acid:
TEYSSFVQCHRYGCEVPPAV
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.7
44.4
Major BPS
40.6
-0.5
1.4
32.2
34.8
Major PPT
58.7
0.2
1
50.2
39.3
Minor 5ss
33.8
-1.8
3.6
47.3
48.3
Minor BPS
25.3
-1.8
2.4
37.45
42.2

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000020360
21359029 - 21364353
5325
ENSAPLT00000005856
21359029 - 21365055
6027
ENSAPLT00000034727
21359029 - 21364353
5325