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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21362809_21363126_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21362809 - 21363126
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
CGTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
GCCCCCAGCACC
Flanking Amino Acid:
YSLQQEMVLALKEILGEYYS
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
60.3
37.2
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
65.7
0.35
1
57.9
38.5
Minor 5ss
34.6
-1.8
3.5
53.1
43.6
Minor BPS
40.7
-0.7
2
46.45
42

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000020360
21359029 - 21364353
5325
ENSAPLT00000005856
21359029 - 21365055
6027
ENSAPLT00000005839
21359029 - 21365055
6027
ENSAPLT00000034727
21359029 - 21364353
5325