About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21363154_21363240_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21363154 - 21363240
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
AGTCCCTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
AGTCCCTCTACA
Flanking Amino Acid:
SLWKLYALHNHLQQEMVLAL
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
64
40.6
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
73.7
0.53
0.9
65.6
35.5
Minor 5ss
36.5
-1.5
3.5
55.5
42.8
Minor BPS
51.1
0.03
1.9
64.95
40.3

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005856
21359029 - 21365055
6027