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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21363311_21363542_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21363311 - 21363542
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
GGTGCCCCCATG
Flanking Amino Acid:
AKRKYQEASKDREREKAKEK
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
78
0.63
0.7
72.3
25.7
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
38
-1
2.2
41.82
42.9

Associated Gene:

Gene:
FES
Ensembl Gene ID:
ENSAPLG00000005644
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022246
21359029 - 21365055
6027
ENSAPLT00000020360
21359029 - 21364353
5325
ENSAPLT00000005856
21359029 - 21365055
6027
ENSAPLT00000005839
21359029 - 21365055
6027
ENSAPLT00000034727
21359029 - 21364353
5325