Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21406989_21407204_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21406989 - 21407204

Intron Length:

216

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGCCG

5'SS Class:

major

3'SS Sequence:

TGTGCTCCAGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTCAC

U12 Branch Point Sequence:

TTGTGCTCCAGC

Flanking Amino Acid:

ERQQVALLQHSQPHGPAARS

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.41

1.1

51.2

45.4

Major BPS

59.8

0.24

1.3

63.1

44.5

Major PPT

68.9

0.43

63.6

38.1

Minor 5ss

-2.4

3.5

38.8

46.5

Minor BPS

-0.6

2.5

57.89

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033789

21404835 - 21409097

4263

ENSAPLT00000029342

21404835 - 21409000

4166