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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21408890_21408989_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21408890 - 21408989
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
IVYEYSHFKKSYPNYQQEKN
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023858
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033789
21404835 - 21409097
4263