Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21411533_21412080_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21411533 - 21412080

Intron Length:

548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTGTT

5'SS Class:

major

3'SS Sequence:

TCTGTTTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

ACATCCTGAGCT

Flanking Amino Acid:

NDVPSPYEVRGFPTIYFAPA

Intron Amino Acid Position:

448

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

76.2

39.9

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

80.3

0.68

0.8

72.9

37.4

Minor 5ss

36.8

-1.5

3.6

48.8

47.3

Minor BPS

57.6

0.32

1.7

72.6

43.7

Associated Gene:

Gene:

PDIA3

Ensembl Gene ID:

ENSAPLG00000010321

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010783

21410768 - 21419081

8314