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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21412161_21412863_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21412161 - 21412863
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTACTAACA
Flanking Amino Acid:
EPKYKELGEKLSKDPNIVIA
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.9
0.65
0.9
74.5
34
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
55.1
0.16
1.9
74.86
35.8

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314