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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21412993_21413876_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21412993 - 21413876
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGAACTCCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TCTAATTGAACT
Flanking Amino Acid:
VPESNDGPVKVVVAENFDEI
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
61.4
0.26
1.1
59
42.6
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
56
0.27
1.7
74.64
41.9

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314