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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21415400_21415861_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21415400 - 21415861
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTTCATT
Flanking Amino Acid:
GKIKKFIQENIFGICPHMTE
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
83.4
28
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.9
74.2
35.4
Minor 5ss
35.6
-1.6
3.5
53.7
43.8
Minor BPS
53.7
0.2
1.7
69.97
42.5

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314