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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21415979_21416459_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21415979 - 21416459
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TGCTTCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ACACTTTGAACT
Flanking Amino Acid:
QLVQKYEEDGEGIVLFRPSR
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.4
0.59
0.8
73.7
31.4
Minor 5ss
43.2
-0.7
2.8
54.8
43.5
Minor BPS
53
0.17
1.4
65.15
39.2

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314