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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21416590_21417460_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21416590 - 21417460
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
GGGTCACCATCT
Flanking Amino Acid:
FIGDKDASVVGFFGDASGDA
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.1
38.4
Major BPS
53
0.08
1.4
63
42.7
Major PPT
82.3
0.73
0.8
76.9
31.8
Minor 5ss
29.2
-2.4
2.5
25
36.7
Minor BPS
39.5
-0.7
2.1
56.34
45

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314