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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21417569_21417669_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21417569 - 21417669
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTGTATTAATC
Flanking Amino Acid:
AGTYDGPRTADGIVSHLKKQ
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.1
0.65
1
83.4
32
Minor 5ss
32.6
-2
3.4
40.6
45.1
Minor BPS
56.2
0.17
1.7
66.42
39.9

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314