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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21417788_21418728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21417788 - 21418728
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGCT
5'SS Class:
major
3'SS Sequence:
TCTATTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATATTTCTATTC
Flanking Amino Acid:
RLKGIVPLVKVDCTANSNTC
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.8
40.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.9
0.67
0.8
78
30.7
Minor 5ss
32.1
-2
3.6
47.1
48.5
Minor BPS
46.4
-0.2
1.8
57.52
35.4

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314