About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21418808_21418917_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21418808 - 21418917
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TCCGTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
CGGGCCTAACCC
Flanking Amino Acid:
GLVLVEFFAPWCGHCKRLAP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
76.5
0.6
0.8
68.3
37.4
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
44.4
-0.4
2
50.04
46.7

Associated Gene:

Gene:
PDIA3
Ensembl Gene ID:
ENSAPLG00000010321
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010783
21410768 - 21419081
8314