About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21438062_21438149_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21438062 - 21438149
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
CDCLISFHSKGFPLDKAVAY
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
PPIP5K1
Ensembl Gene ID:
ENSAPLG00000010796
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030246
21435347 - 21480410
45064
ENSAPLT00000041625
21435347 - 21480410
45064
ENSAPLT00000025838
21435347 - 21480410
45064
ENSAPLT00000037151
21434121 - 21480410
46290
ENSAPLT00000023289
21435347 - 21480410
45064
ENSAPLT00000034618
21435347 - 21480410
45064
ENSAPLT00000011289
21435347 - 21480410
45064
ENSAPLT00000033765
21434121 - 21480410
46290
ENSAPLT00000046931
21434121 - 21480410
46290